Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2023-12-01 11:03:17,103 [625] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2023-12-01 11:03:17,232 [625] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2023-12-01 11:03:17,237 [625] INFO pulse.unloader: ------------------------------------------------------------------------
2023-12-01 11:03:17,237 [625] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2023-12-01 11:03:17,238 [625] INFO pulse.unloader: ------------------------------------------------------------------------
2023-12-01 11:03:17,268 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:17,269 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:17,270 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:17,270 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:17,441 [625] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2023-12-01 11:03:18,261 [625] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2023-12-01 11:03:18,277 [625] INFO pulse.unloader:
Do an intial solve
2023-12-01 11:03:18,365 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:18,366 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:18,367 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:18,367 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:18,368 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:18,878 [625] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-12-01 11:03:18,953 [625] DEBUG UFL_LEGACY: Blocks of each mode:
2023-12-01 11:03:19,162 [625] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-12-01 11:03:57,782 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:57,782 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:57,783 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:57,783 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:57,784 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:03:57,974 [625] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-12-01 11:03:58,049 [625] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-12-01 11:03:58,242 [625] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-12-01 11:04:01,715 [625] INFO pulse.unloader:
Iteration: 0
2023-12-01 11:04:05,276 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-12-01 11:04:05,318 [625] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-12-01 11:04:09,552 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:09,556 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-12-01 11:04:09,600 [625] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-12-01 11:04:09,997 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:10,040 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:10,042 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:10,084 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:10,085 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:10,124 [625] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2023-12-01 11:04:10,279 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:10,280 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:10,281 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:10,281 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:10,282 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:10,579 [625] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-12-01 11:04:10,654 [625] DEBUG UFL_LEGACY: Blocks of each mode:
2023-12-01 11:04:10,860 [625] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-12-01 11:04:49,640 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:49,641 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:49,642 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:49,643 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:49,643 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-01 11:04:49,781 [625] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-12-01 11:04:49,856 [625] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-12-01 11:04:50,048 [625] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-12-01 11:04:53,519 [625] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2023-12-01 11:04:53,692 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:53,694 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:53,735 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:53,736 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:53,778 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:53,779 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:53,817 [625] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2023-12-01 11:04:53,829 [625] INFO pulse.unloader:
Residual: 0.011328623428538017
2023-12-01 11:04:53,829 [625] INFO pulse.unloader:
Iteration: 1
2023-12-01 11:04:54,002 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:54,004 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:54,045 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:54,046 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:54,088 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:54,089 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:54,126 [625] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2023-12-01 11:04:57,145 [625] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2023-12-01 11:04:57,318 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,320 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,362 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,363 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,405 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,406 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,445 [625] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2023-12-01 11:04:57,456 [625] INFO pulse.unloader:
Residual: 0.001698010214540199
2023-12-01 11:04:57,457 [625] INFO pulse.unloader:
Iteration: 2
2023-12-01 11:04:57,631 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,632 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,674 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,675 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,716 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,717 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:04:57,754 [625] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2023-12-01 11:05:00,766 [625] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2023-12-01 11:05:00,939 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:00,940 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:00,983 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:00,984 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,026 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,027 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,065 [625] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2023-12-01 11:05:01,077 [625] INFO pulse.unloader:
Residual: 0.0002592876931300245
2023-12-01 11:05:01,078 [625] INFO pulse.unloader:
Iteration: 3
2023-12-01 11:05:01,252 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,253 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,295 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,296 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,337 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,339 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:01,376 [625] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2023-12-01 11:05:04,386 [625] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2023-12-01 11:05:04,559 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,560 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,602 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,603 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,645 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,646 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,685 [625] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2023-12-01 11:05:04,696 [625] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2023-12-01 11:05:04,697 [625] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2023-12-01 11:05:04,874 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,876 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,917 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,918 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,960 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-01 11:05:04,961 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()